Publications BioStruct

This list shows publications involving BioStruct students from the start of BioStruct up to 2012:

Aam BB, Heggset EB, Norberg AL, Sørlie M, Vårum KM, Eijsink VG.; Production of chitooligosaccharides and their potential applications in medicine.; Mar Drugs. 2010 Apr 27;8(5):1482-517. Review.

Andersen JT, Dalhus B, Cameron J, Daba MB, Plumridge A, Evans L, Gunnarsen KS, Bjørås M, Sleep D, Sandlie I.; Structure-based mutagenesis reveals the albumin-binding site of the neonatal Fc receptor.; Nat Commun. 2012, Jan 3;3:610.

Assefa NG, Niiranen L, Willassen NP, Smalås A, Moe E.; Thermal unfolding studies of cold adapted uracil-DNA N-glycosylase (UNG) from Atlantic cod (Gadus morhua). A comparative study with human UNG.; Comp Biochem Physiol B Biochem Mol Biol. 2012 Jan;161(1):60-8.

Baglo Y, Sousa MM, Slupphaug G, Hagen L, Håvåg S, Helander L, Zub KA, Krokan HE, Gederaas OA.; Photodynamic therapy with hexyl aminolevulinate induces carbonylation, posttranslational modifications and changed expression of proteins in cell survival and cell death pathways.; Photochem Photobiol Sci. 2011 Jul;10(7):1137-45.

Baglo Y, Gabrielsen M, Sylte I, Gederaas OA.; Homology Modeling of Human γ-Butyric Acid Transporters and the Binding of Pro-Drugs 5-Aminolevulinic Acid and Methyl Aminolevulinic Acid Used in Photodynamic Therapy.; PLoS ONE 8(6): e65200. doi:10.1371/journal.pone.0065200

Baumann A, Gjerde AU, Ying M, Svanborg C, Holmsen H, Glomm WR, Martinez A, Halskau O.; HAMLET forms annular oligomers when deposited with phospholipid monolayers. ; J Mol Biol. 2012 Apr 20;418(1-2):90-102. Biophy. J. 2009 97: 1244-1253.

Bjørnstad LG, Zoppellaro G, Tomter AB, Falnes PØ, Andersson KK.; Spectroscopic and magnetic studies of wild-type and mutant forms of the Fe(II)- and 2-oxoglutarate-dependent decarboxylase ALKBH4.; Biochem J. 2011 Mar 15;434(3):391-8.

Borra PS, Leiros HK, Ahmad R, Spencer J, Leiros I, Walsh TR, Sundsfjord A, Samuelsen O.; Structural and computational investigations of VIM-7: insights into the substrate specificity of vim metallo-β-lactamases.; J Mol Biol. 2011 Aug 5;411(1):174-89.

Brenner AK, Kieffer B, Travé G, Frøystein NA, Raae AJ.; Thermal stability of chicken brain α-spectrin repeat 17: a spectroscopic study.; J Biomol NMR. 2012 May 9. [Epub ahead of print]

Bustad H, Underhaug J, Halskau Ø, Martinez A.; The binding of 14-3-3γ to membranes studied by intrinsic fluorescence spectroscopy.; FEBS letters. 2011;585(8):1163-8.

Bustad HJ, Skjaerven L, Ying M, Halskau Ø, Baumann A, Rodriguez-Larrea D, Costas M, Underhaug J, Sanchez-Ruiz JM, Martinez A.: The peripheral binding of 14-3-3γ to membranes involves isoform-specific histidine residues.; PLoS One. 2012;7(11):e49671. doi: 10.1371/journal.pone.0049671. Epub 2012 Nov 26. PMID: 23189152

Cordara G, Egge-Jacobsen W, Johansen HT, Winter HC, Goldstein IJ, Sandvig K, Krengel U., : Marasmius oreades agglutinin (MOA) is a chimerolectin with proteolytic activity.  Biochem Biophys Res Commun. 2011 May 13;408 (3):405-10

Dobrovolska O, Rychkov G, Shumilina E, Nerinovski K, Schmidt A, Shabalin K, Yakimov A, Dikiy A.; Structural insights into interaction between mammalian methionine sulfoxide reductase B1 and thioredoxin.; J Biomed Biotechnol. 2012; Epub 2012 Jan 5.

Dobrovolska O, Shumilina E, Gladyshev VN, Dikiy A.; Structural Analysis of Glutaredoxin Domain of Mus musculus Thioredoxin Glutathione Reductase.; PLoS One. 2012;7(12):e52914. doi: 10.1371/journal.pone.0052914. Epub 2012 Dec 26

Doseth B, Visnes T, Wallenius A, Ericsson I, Sarno A, Pettersen HS, Flatberg A, Catterall T, Slupphaug G, Krokan HE, Kavli B.; Uracil-DNA glycosylase in base excision repair and adaptive immunity: species differences between man and mouse.; J Biol Chem. 2011 May 13;286(19):16669-80

Drengstig T, Ni X. Y, Thorsen K, Jolma I , Ruoff P. ; Robust adaptation and homeostasis by autocatalysis. J- Phys. Chem. B 2012 116: 5355-5363.

Drengstig T, Jolma IW, Ni XY, Thorsen K, Xu XM, Ruoff P. ; A Basic Set of Homeostatic Controller Motifs. Biophys. J.  2012 103: 2000-2010.

Dybvik AI, Norberg AL, Schute V, Soltwisch J, Peter-Katalinić J, Vårum KM, Eijsink VG, Dreisewerd K, Mormann M, Sørlie M.; Analysis of noncovalent chitinase-chito-oligosaccharide complexes by infrared-matrix assisted laser desorption ionization and nanoelectrospray ionization mass spectrometry.; Anal Chem. 2011 Jun 1;83(11):4030-6.

Eide KB, Norberg AL, Heggset EB, Lindbom AR, Vårum KM, Eijsink VG, Sørlie M.; Human chitotriosidase-catalyzed hydrolysis of chitosan.;Biochemistry. 2012 Jan 10;51(1):487-95.

El Salabi A, Borra PS, Toleman MA, Samuelsen Ø, Walsh TR.; Genetic and biochemical characterization of a novel metallo-β-lactamase, TMB-1, from an Achromobacter xylosoxidans strain isolated in Tripoli, Libya.; Antimicrob Agents Chemother. 2012 May;56(5):2241-5.

Eliassen LT, Berge G, Leknessund A, Wikman M, Lindin I, Løkke C, Ponthan F, Johnsen JI, Sveinbjørnsson B, Kogner P, Flaegstad T, Rekdal Ø.; The antimicrobial peptide, lactoferricin B, is cytotoxic to neuroblastoma cells in vitro and inhibits xenograft growth in vivo.; Int J Cancer. 2006 Aug 1;119(3):493-500.

Evjenth RH, Brenner AK, Thompson PR, Arnesen T, Frøystein NÅ, Lillehaug JR.; Human protein N-terminal acetyltransferase hNaa50p (hNAT5/hSAN) follows ordered sequential catalytic mechanism: combined kinetic and NMR study.; J Biol Chem. 2012 Mar 23;287(13):10081-8.

Fadnes B, Uhlin-Hansen L, Lindin I, Rekdal Ø.; Small lytic peptides escape the inhibitory effect of heparan sulfate on the surface of cancer cells.; BMC Cancer. 2011 Mar 31;11:116.

Feyissa DN, Løvdal T, Olsen KM, Slimestad R, Lillo C.; The endogenous GL3, but not EGL3, gene is necessary for anthocyanin accumulation as induced by nitrogen depletion in Arabidopsis rosette stage leaves.; Planta. 2009 Sep;230(4):747-54.

Fimland N, Rogne P, Fimland G, Nissen-Meyer J, Kristiansen PE.; Three-dimensional structure of the two peptides that constitute the two-peptide bacteriocin plantaricin EF.; Biochim Biophys Acta. 2008 Nov;1784(11):1711-9.

Flaten GE, Kottra G, Stensen W, Isaksen G, Karstad R, Svendsen JS, Daniel H, Svenson J.; In vitro characterization of human peptide transporter hPEPT1 interactions and passive permeation studies of short cationic antimicrobial peptides.; J Med Chem. 2011 Apr 14;54(7):2422-32.

Flydal MI, Mohn TC, Pey AL, Siltberg-Liberles J, Teigen K, Martinez A.; Superstoichiometric binding of L-Phe to phenylalanine hydroxylase from Caenorhabditis elegans: evolutionary implications.; Amino Acids. 2010 Nov;39(5):1463-75

Forsberg Z, Vaaje-Kolstad G, Westereng B, Bunæs AC, Stenstrøm Y, MacKenzie A, Sørlie M, Horn SJ, Eijsink VG.; Cleavage of cellulose by a CBM33 protein.; Protein Sci. 2011 Sep;20(9):1479-83.

Fredriksen L, Mathiesen G, Moen A, Bron PA, Kleerebezem M, Eijsink VG, Egge-Jacobsen W.; The major autolysin Acm2 from Lactobacillus plantarum undergoes cytoplasmic O-glycosylation.; J Bacteriol. 2012 Jan;194(2):325-33.

Fredriksen L, Mathiesen G, Sioud M, Eijsink VG.; Cell wall anchoring of the 37-kilodalton oncofetal antigen by Lactobacillus plantarum for mucosal cancer vaccine delivery.; Appl Environ Microbiol. 2010 Nov;76(21):7359-62.

Fuglebakk E, Echave J, Reuter N.;  Measuring and comparing structural fluctuation patterns in large protein datasets.; Bioinformatics 2012 28 (19): 2431-2440.

Gabrielsen M, Kurczab R, Ravna AW, Kufareva I, Abagyan R, Chilmonczyk Z, Bojarski AJ, Sylte I.; Molecular mechanism of serotonin transporter inhibition elucidated by a new flexible docking protocol.; Eur J Med Chem. 2012 Jan;47(1):24-37.

Gabrielsen M, Ravna AW, Kristiansen K, Sylte I.; Substrate binding and translocation of the serotonin transporter studied by docking and molecular dynamics simulations.; J Mol Model. 2012 Mar;18(3):1073-85.

Gabrielsen M, Sylte I, Dahl SG, Ravna AW.; A short update on the structure of drug binding sites on neurotransmitter transporters.; BMC Res Notes. 2011 Dec 22;4:559.

Gerits N, Kostenko S, Moens U.; In vivo functions of mitogen-activated protein kinases: conclusions from knock-in and knock-out mice.; Transgenic Res. 2007 Jun;16(3):281-314.

Gerits N, Kostenko S, Shiryaev A, Johannessen M, Moens U.; Relations between the mitogen-activated protein kinase and the cAMP-dependent protein kinase pathways: comradeship and hostility.; Cell Signal. 2008 Sep;20(9):1592-607

Gerits N, Mikalsen T, Kostenko S, Shiryaev A, Johannessen M, Moens U.; Modulation of F-actin rearrangement by the cyclic AMP/cAMP-dependent protein kinase (PKA) pathway is mediated by MAPK-activated protein kinase 5 and requires PKA-induced nuclear export of MK5.; J Biol Chem. 2007 Dec 21;282(51):37232-43.

Gerits N, Shiryaev A, Kostenko S, Klenow H, Shiryaeva O, Johannessen M, Moens U.; The transcriptional regulation and cell-specific expression of the MAPK-activated protein kinase MK5.; Cell Mol Biol Lett. 2009;14(4):548-74. Epub 2009 May 30.

Gunnarsen KS, Lunde E, Kristiansen PE, Bogen B, Sandlie I, Løset GA.; Periplasmic expression of soluble single chain T cell receptors is rescued by the chaperone FkpA.; BMC Biotechnol. 2010 Feb 3;10:8.

Halskau Ø Jr, Ying M, Baumann A, Kleppe R, Rodriguez-Larrea D, Almås B, Haavik J, Martinez A.; Three-way interaction between 14-3-3 proteins, the N-terminal region of tyrosine hydroxylase, and negatively charged membranes. ; J Biol Chem. 2009 Nov 20;284(47):32758-69.

Hansen GA, Ahmad R, Hjerde E, Fenton CG, Willassen NP, Haugen P.; Expression profiling reveals Spot 42 small RNA as a key regulator in the central metabolism of Aliivibrio salmonicida.; BMC Genomics. 2012 Jan 24;13:37.

Harbitz E, Andersson KK.; Cytochrome c-554 from Methylosinus trichosporium OB3b; a protein that belongs to the cytochrome c2 family and exhibits a HALS-Type EPR signal.; PLoS One. 2011;6(7):e22014.

Harmsen RAG, Sivertsen A, Michetti D, Brandsdal BO, Sydnes LK, Haug BE.; Synthesis and docking of novel piperidine inhibitors.; Monatsh Chem. 2013. Online first articles, doi 10.1007/s00706-012-0903-5

Haugen HS, Fimland G, Nissen-Meyer J, Kristiansen PE.; Three-dimensional structure in lipid micelles of the pediocin-like antimicrobial peptide curvacin A.; Biochemistry. 2005 Dec 13;44(49):16149-57.

Haugen HS, Fimland G, Nissen-Meyer J.: Mutational analysis of residues in the helical region of the class IIa bacteriocin pediocin PA-1. Appl Environ Microbiol. 2011 Mar;77(6):1966-72.

Haugen HS, Kristiansen PE, Fimland G, Nissen-Meyer J. : Mutational analysis of the class IIa bacteriocin curvacin A and its orientation in target cell membranes. ; Appl Environ Microbiol. 2008 Nov;74(21):6766-73.

Haugland G, Innselset M, Madern D, Birkeland, N-K. Characterization of the Cdc6 Homologues from the Euryarchaeon Thermoplasma acidophilum. The open biochemistry journal. 2008 2, 129-34.

Heggelund JE, Haugen E, Lygren B, Mackenzie A, Holmner S, Vasile F, Reina JJ, Bernardi A, Krengel U.; Both El Tor and classical cholera toxin bind blood group determinants.: Biochem Biophys Res Commun. 2012 Feb 24;418(4):731-5.

Heggset EB, Dybvik AI, Hoell IA, Norberg AL, Sørlie M, Eijsink VG, Vårum KM.; Degradation of chitosans with a family 46 chitosanase from Streptomyces coelicolor A3(2).; Biomacromolecules. 2010 Sep 13;11(9):2487-97.

Hollup S M, Fuglebakk E, Taylor WR, Reuter N.; Exploring the factors determining the dynamics of different protein folds.; Protein Science 2011 Jan 20; 1: 197-209

Hoppmann V, Thorstensen T, Kristiansen PE, Veiseth SV, Rahman MA, Finne K, Aalen RB, Aasland R.; The CW domain, a new histone recognition module in chromatin proteins.; EMBO J. 2011 May 18;30(10):1939-52.

Jolma I. W, Ni X. Y,  Rensing L, Ruoff P. ; Harmonic oscillations in homeostatic controllers: Dynamics of the p53 regulatory system. Biophy. J. 2010 98: 743-752.

Karlsen C, Espelid S, Willassen NP, Paulsen SM.; Identification and cloning of immunogenic Aliivibrio salmonicida Pal-like protein present in profiled outer membrane and secreted subproteome.; Dis Aquat Organ. 2011 Feb 22;93(3):215-23.

Karlsen C, Paulsen SM, Tunsjø HS, Krinner S, Sørum H, Haugen P, Willassen NP.; Motility and flagellin gene expression in the fish pathogen Vibrio salmonicida: effects of salinity and temperature.; Microb Pathog. 2008 Oct;45(4):258-64.

Karlsen C, Sørum H, Willassen NP, Asbakk K.; Moritella viscosa bypasses Atlantic salmon epidermal keratocyte clearing activity and might use skin surfaces as a port of infection.; Vet Microbiol. 2012 Jan 27;154(3-4):353-62.

Karlsen OA, Ramsevik L, Bruseth LJ, Larsen Ø, Brenner A, Berven FS, Jensen HB, Lillehaug JR.; Characterization of a prokaryotic haemerythrin from the methanotrophic bacterium Methylococcus capsulatus (Bath).; FEBS J. 2005 May;272(10):2428-40.

Karstad R, Isaksen G, Brandsdal BO, Svendsen JS, Svenson J.; Unnatural amino acid side chains as S1, S1′, and S2′ probes yield cationic antimicrobial peptides with stability toward chymotryptic degradation.; J Med Chem. 2010 Aug 12;53(15):5558-66.

Kaupang A, Bolsønes M, Gamadeku T, Hansen T, Hennum MJ, Görbitz CH.; (2SR,3RS)-Benz-yl[4-chloro-1-(4-chloro-phen-yl)-1-methoxy-carbon-yl-2-but-yl]-ammonium chloride.; Acta Crystallogr Sect E Struct Rep Online. 2008 Sep 27;64(Pt 10):o2038.

Kaupang A, Görbitz CH, Hansen T.; 2-Diazo-1-(1,1-dioxothio-morpholin-4-yl)ethanone.; Acta Crystallogr Sect E Struct Rep Online. 2011 Jul 1;67(Pt 7):o1844-5.

Kaupang A, Görbitz CH, Hansen T.; tert-Butyl 4-(2-diazo-acet-yl)piperazine-1-carboxyl-ate.; Acta Crystallogr Sect E Struct Rep Online. 2010 May 8;66(Pt 6):o1299.

Khan MT, Khan R, Wuxiuer Y, Arfan M, Ahmed M, Sylte I.; Identification of novel quinazolin-4(3H)-ones as inhibitors of thermolysin, the prototype of the M4 family of proteinases.; Bioorg Med Chem. 2010 Jun 15;18(12):4317-27.

Khan, MTH, Wuxiuer, Y., and Sylte, I.;  Binding modes and pharmacophore modelling of thermolysin inhibitors.; Mini  Rev. Med. Chem. 2012, 12(6), 515-533.

Kostenko S, Dumitriu G, Lægreid KJ, Moens U.; Physiological roles of mitogen-activated-protein-kinase-activated p38-regulated/activated protein kinase.; World J Biol Chem. 2011 May 26;2(5):73-89.

Kostenko S, Johannessen M, Moens U.; PKA-induced F-actin rearrangement requires phosphorylation of Hsp27 by the MAPKAP kinase MK5.; Cell Signal. 2009 May;21(5):712-8.

Kostenko S, Khan MT, Sylte I, Moens U.; The diterpenoid alkaloid noroxoaconitine is a Mapkap kinase 5 (MK5/PRAK) inhibitor.; Cell Mol Life Sci. 2011 Jan;68(2):289-301.

Kostenko S, Moens U.; Heat shock protein 27 phosphorylation: kinases, phosphatases, functions and pathology.; Cell Mol Life Sci. 2009 Oct;66(20):3289-307.

Kostenko S, Moens U.; Hsp27 phosphorylation pattern and consequences.; Cellular Trafficking of Molecular Chaperones in Health and Disease 2012. B. Henderson and G. Pockley (eds.); Springer; in press. ISBN-10: 940074739X.

Kostenko S, Shiryaev A, Dumitriu G, Gerits N, Moens U.; Cross-talk between protein kinase A and the MAPK-activated protein kinases RSK1 and MK5.; J Recept Signal Transduct Res. 2011 Feb;31(1):1-9.

Kostenko S, Shiryaev A, Gerits N, Dumitriu G, Klenow H, Johannessen M, Moens U.; Serine residue 115 of MAPK-activated protein kinase MK5 is crucial for its PKA-regulated nuclear export and biological function.; Cell Mol Life Sci. 2011 Mar;68(5):847-62.

Kostenko S, Shiryaev A, Gerits N, Moens U.; The roles of mammalian mitogen-activated protein kinase-activated protein kinases (MAPKAPKs) in cell cycle control.; Progress in Cell Cycle Control Research 2008.. Chen K.L. (ed.), pp. 1-25. Nova Science Publishers. ISBN: 978-1-60456-797-7

Leiros HK, Borra PS, Brandsdal BO, Edvardsen KS, Spencer J, Walsh TR, Samuelsen O.; Crystal Structure of the Mobile Metallo-β-Lactamase AIM-1 from Pseudomonas aeruginosa: Insights into Antibiotic Binding and the role of Gln157.; Antimicrob Agents Chemother. 2012 Jun 4. Epub ahead of print

Leiros HK, Pey A, Innselset M, Moe E, Leiros I, Steen I, Martinez A. Structure of phenylalanine hydroxylase from Colwellia psychrerythraea 34H, a monomeric cold active enzyme with local flexibility around the active site and high overall stability. The Journal of biological chemistry. 2007. 282(30), 21973-86.

Malla N, Sjøli S, Winberg JO, Hadler-Olsen E, Uhlin-Hansen L.; Biological and pathobiological functions of gelatinase dimers and complexes.; Connect Tissue Res. 2008;49(3):180-4.

Mathiesen G, Sveen A, Brurberg MB, Fredriksen L, Axelsson L, Eijsink VG.; Genome-wide analysis of signal peptide functionality in Lactobacillus plantarum WCFS1.; BMC Genomics. 2009 Sep 10;10:425.

Moens U, Shiryaev A, Dumitriu G.; Comment on “Increased MKK4 abundance with replicative senescence is linked to the joint reduction of multiple microRNAs”.; Science Signal 2010, July20; 3(131):Ic1. Author reply Ic2.

Nguyen TT, Mathiesen G, Fredriksen L, Kittl R, Nguyen TH, Eijsink VG, Haltrich D, Peterbauer CK.; A food-grade system for inducible gene expression in Lactobacillus plantarum using an alanine racemase-encoding selection marker.; J Agric Food Chem. 2011 May 25;59(10):5617-24.

Ni X. Y. , Drengstig T., Ruoff P. ; The control of the controller: Molecular mechanisms for robust perfect adaptation and temperature compensation.; Probiotics Antimicrob Proteins. 2010 Mar;2(1):52-60

Nissen-Meyer J, Oppegård C, Rogne P, Haugen HS, Kristiansen PE. : Structure and Mode-of-Action of the Two-Peptide (Class-IIb) Bacteriocins. Probiotics Antimicrob Proteins. 2010 Mar;2(1):52-60

Nissen-Meyer J, Rogne P, Oppegård C, Haugen HS, Kristiansen PE. : Structure-function relationships of the non-lanthionine-containing peptide (class II) bacteriocins produced by gram-positive bacteria. : Curr Pharm Biotechnol. 2009 Jan;10(1):19-37.

Norberg AL, Dybvik AI, Zakariassen H, Mormann M, Peter-Katalinić J, Eijsink VG, Sørlie M.; Substrate positioning in chitinase A, a processive chito-biohydrolase from Serratia marcescens.; FEBS Lett. 2011 Jul 21;585(14):2339-44

Norberg AL, Karlsen V, Hoell IA, Bakke I, Eijsink VG, Sørlie M.; Determination of substrate binding energies in individual subsites of a family 18 chitinase.; FEBS Lett. 2010 Nov 19;584(22):4581-5.

Norberg AL., Eijsink VGH., Sørlie, M.; Dissecting Factors that Contribute to Ligand-Binding Energetics for Family 18 Chitinases.; Thermochim. Acta, 2010, 511, 189-193.

Oliveira TM, Ahmad R, Engh RA.; VX680 binding in Aurora A: π-π interactions involving the conserved aromatic amino acid of the flexible glycine-rich loop.; J Phys Chem A. 2011 Apr 28;115(16):3895-904.

Oppegård C, Emanuelsen L, Thorbek L, Fimland G, Nissen-Meyer J.; The lactococcin G immunity protein recognizes specific regions in both peptides constituting the two-peptide bacteriocin lactococcin G.; Appl Environ Microbiol. 2010 Feb;76(4):1267-73

Oppegård C, Fimland G, Thorbaek L, Nissen-Meyer J.; Analysis of the two-peptide bacteriocins lactococcin G and enterocin 1071 by site-directed mutagenesis.; Appl Environ Microbiol. 2007 May;73(9):2931-8.

Oppegård C, Rogne P, Emanuelsen L, Kristiansen PE, Fimland G, Nissen-Meyer J.; The two-peptide class II bacteriocins: structure, production, and mode of action.; J Mol Microbiol Biotechnol. 2007;13(4):210-9.

Oppegård C, Rogne P, Kristiansen PE, Nissen-Meyer J.; Structure analysis of the two-peptide bacteriocin lactococcin G by introducing D-amino acid residues.; Microbiology. 2010 Jun;156(Pt 6):1883-9.

Oppegård C, Schmidt J, Kristiansen PE, Nissen-Meyer J.; Mutational analysis of putative helix-helix interacting GxxxG-motifs and tryptophan residues in the two-peptide bacteriocin lactococcin G.; Biochemistry. 2008 May 6;47(18):5242-9.

Pedersen HL, Hjerde E, Paulsen SM, Hansen H, Olsen L, Thode SK, Santos MT, Paulssen RH, Willassen NP, Haugen P.; Global responses of Aliivibrio salmonicida to hydrogen peroxide as revealed by microarray analysis.; Mar Genomics. 2010 Sep-Dec;3(3-4):193-200.

Pflug A, de Oliveira TM, Bossemeyer D, Engh RA.; Mutants of protein kinase A that mimic the ATP-binding site of Aurora kinase.; Biochem J. 2011 Nov 15;440(1):85-93.

Pflug A, Rogozina J, Lavogina D, Enkvist E, Uri A, Engh RA, Bossemeyer D.; Diversity of bisubstrate binding modes of adenosine analogue-oligoarginine conjugates in protein kinase a and implications for protein substrate interactions.; J Mol Biol. 2010 Oct 15;403(1):66-77.

Qiao SW, Ráki M, Gunnarsen KS, Løset GÅ, Lundin KE, Sandlie I, Sollid LM.; Posttranslational modification of gluten shapes TCR usage in celiac disease.; J Immunol. 2011 Sep 15;187(6):3064-71.

Rekdal Ø, Haug BE, Kalaaji M, Hunter HN, Lindin I, Israelsson I, Solstad T, Yang N, Brandl M, Mantzilas D, Vogel HJ.; Relative spatial positions of tryptophan and cationic residues in helical membrane-active peptides determine their cytotoxicity.; J Biol Chem. 2012 Jan 2;287(1):233-44.

Rogne P, Fimland G, Nissen-Meyer J, Kristiansen PE.; Three-dimensional structure of the two peptides that constitute the two-peptide bacteriocin lactococcin G.; Biochim Biophys Acta. 2008 Mar;1784(3):543-54.

Rogne P, Haugen C, Fimland G, Nissen-Meyer J, Kristiansen PE.; Three-dimensional structure of the two-peptide bacteriocin plantaricin JK.; Peptides. 2009 Sep;30(9):1613-21

Sand SL, Oppegård C, Ohara S, Iijima T, Naderi S, Blomhoff HK, Nissen-Meyer J, Sand O.; Plantaricin A, a peptide pheromone produced by Lactobacillus plantarum, permeabilizes the cell membrane of both normal and cancerous lymphocytes and neuronal cells.; Peptides. 2010 Jul;31(7):1237-44

Shiryaev A, Dumitriu G, Moens U.; Distinct roles of MK2 and MK5 in cAMP/PKA- and stress/p38MAPK-induced heat shock protein 27 phosphorylation. J Mol Sign 2011 May;6(1):4.

Shiryaev A, Kostenko S, Dumitriu G, Moens U.; Septin 8 is an interaction partner and in vitro substrate of MK5.; World J Biol Chem. 2012 May 26;3(5):98-109.

Shiryaev A, Moens U. 2010.; Mitogen-activated protein kinase p38 and MK2, MK3 and MK5: ménage à trois or ménage à quatre?; Cell Signal. 2010 Aug;22(8):1185-1192.

Shiryaev A, Van Ghelue M, Moens U.; Mitogen-activated protein kinase-activated protein kinases and metastasis.; Signal transduction in Cancer Metastasis 2010. W.S. Wu and C.T Hu (eds.). pp. 41-76, Springer. ISBN 978-90-481-9521-3.

Siltberg-Liberles, J, Flydal, MI, Teigen, K, Martinez, A. Evolution of Regulation , Structure and Function in Phenylalanine Hydroxylase. Pteridines. 2009 20, 42-50.

Skjaerven L, Grant B, Muga A, Teigen K, McCammon JA, Reuter N, Martinez A.; Conformational sampling and nucleotide-dependent transitions of the GroEL subunit probed by unbiased molecular dynamics simulations.; PLoS Comput Biol. 2011 Mar;7(3):e1002004.

Skjaerven L, Jonassen I, Reuter N. ;; BMC Bioinformatics. 2007 Jul 2;8:232.

Skjaerven L, Martinez A, Reuter N.; Principal component and normal mode analysis of proteins; a quantitative comparison using the GroEL subunit.; Proteins. 2011 Jan;79(1):232-43.

Skjaerven L, Muga A, Reuter N, Martinez A. ; A dynamic model of long-range conformational adaptations triggered by nucleotide binding in GroEL-GroES.; Proteins. 2012 May 10. doi: 10.1002/prot.24113.

Skjaerven L, Reuter N, Martinez A. ; Dynamics, flexibility and ligand-induced conformational changes in biological macromolecules: a computational approach.; Future Med Chem. 2011 Dec;3(16):2079-100. Review.

Havukainen H, Halskau Ø, Skjaerven L, Smedal B, Amdam GV.; Deconstructing honeybee vitellogenin: novel 40 kDa fragment assigned to its N terminus.; J Exp Biol. 2011 Feb 15;214(Pt 4):582-92

Solbak SM, Wray V, Horvli O, Raae AJ, Flydal MI, Henklein P, Henklein P, Nimtz M, Schubert U, Fossen T.; The host-pathogen interaction of human cyclophilin A and HIV-1 Vpr requires specific N-terminal and novel C-terminal domains.; BMC Struct Biol. 2011 Dec 20;11:49.

Sørlie  M, Zakariassen H, Norberg AL, Eijsink VGH.; Processivity and substrate-binding in family 18 chitinases.; Biocatal. Biotransf., 2012, 30, 353-365.

Steinkopf S, Simeunović A, Bustad HJ, Ngo TH, Sveaass H, Gjerde AU, Holmsen H., pH-dependent interaction of psychotropic drug with glycerophospholipid monolayers studied by the Langmuir technique., Biophysical chemistry. 2010;152(1-3):65-73.

Svenning S, Lamark T, Krause K, Johansen T.; Plant NBR1 is a selective autophagy substrate and a functional hybrid of the mammalian autophagic adapters NBR1 and p62/SQSTM1.; Autophagy. 2011 Sep;7(9):993-1010.

Tang Y, Nielsen H, Birgisdottir AB, Johansen S.; A natural fast-cleaving branching ribozyme from the amoeboflagellate Naegleria pringsheimi.; RNA Biol. 2011 Nov-Dec;8(6):997-1004.

Tomter AB, Bell CB 3rd, Røhr AK, Andersson KK, Solomon EI.; Circular dichroism and magnetic circular dichroism studies of the biferrous site of the class Ib ribonucleotide reductase from Bacillus cereus: comparison to the class Ia enzymes.; Biochemistry. 2008 Oct 28;47(43):11300-9.

Tomter AB, Zoppellaro G, Bell CB 3rd, Barra AL, Andersen NH, Solomon EI, Andersson KK.; Spectroscopic studies of the iron and manganese reconstituted tyrosyl radical in Bacillus cereus ribonucleotide reductase R2 protein.; PLoS One. 2012;7(3):e33436.

Tomter AB, Zoppellaro G, Schmitzberger F, Andersen NH, Barra AL, Engman H, Nordlund P, Andersson KK.; HF-EPR, Raman, UV/VIS light spectroscopic, and DFT studies of the ribonucleotide reductase R2 tyrosyl radical from Epstein-Barr virus.; PLoS One. 2011;6(9):e25022.

Vaaje-Kolstad G, Westereng B, Horn SJ, Liu Z, Zhai H, Sørlie M, Eijsink VG.; An oxidative enzyme boosting the enzymatic conversion of recalcitrant polysaccharides.; Science. 2010 Oct 8;330(6001):219-22.

Vasur J, Kawai R, Jonsson KH, Widmalm G, Engström A, Frank M, Andersson E, Hansson H, Forsberg Z, Igarashi K, Samejima M, Sandgren M, Ståhlberg J.; Synthesis of cyclic beta-glucan using laminarinase 16A glycosynthase mutant from the basidiomycete Phanerochaete chrysosporium.; Am Chem Soc. 2010 Feb 10;132(5):1724-30.

Veiseth SV, Rahman MA, Yap KL, Fischer A, Egge-Jacobsen W, Reuter G, Zhou MM, Aalen RB, Thorstensen T.; The SUVR4 histone lysine methyltransferase binds ubiquitin and converts H3K9me1 to H3K9me3 on transposon chromatin in Arabidopsis.; PLoS Genet. 2011 Mar;7(3)

Zakariassen H, Aam BB, Horn SJ, Vårum KM, Sørlie M, Eijsink VG.; Aromatic residues in the catalytic center of chitinase A from Serratia marcescens affect processivity, enzyme activity, and biomass converting efficiency.; J Biol Chem. 2009 Apr 17;284(16):10610-7

Zakariassen H, Cederkvist FH, Harbitz E, Shimizu T, Lange R, Mayer B, Gorren AC, Andersson KK, Sørlie M.; Thermodynamic analysis of L-arginine and N omega-hydroxy-L-arginine binding to nitric oxide synthase.; Biochim Biophys Acta. 2008 May;1784(5):806-10

Zakariassen H, Hansen MC, Jøranli M, Eijsink VG, Sørlie M.; Mutational effects on transglycosylating activity of family 18 chitinases and construction of a hypertransglycosylating mutant.; Biochemistry. 2011 Jun 28;50(25):5693-703

Zoppellaro G, Bren KL, Ensign AA, Harbitz E, Kaur R, Hersleth HP, Ryde U, Hederstedt L, Andersson KK.; Review: studies of ferric heme proteins with highly anisotropic/highly axial low spin (S = 1/2) electron paramagnetic resonance signals with bis-histidine and histidine-methionine axial iron coordination.; Biopolymers. 2009 Dec;91(12):1064-82. Review.

Zoppellaro G, Harbitz E, Kaur R, Ensign AA, Bren KL, Andersson KK.; Modulation of the ligand-field anisotropy in a series of ferric low-spin cytochrome c mutants derived from Pseudomonas aeruginosa cytochrome c-551 and Nitrosomonas europaea cytochrome c-552: a nuclear magnetic resonance and electron paramagnetic resonance study.; J Am Chem Soc. 2008 Nov 19;130(46):15348-60.

Zoppellaro G, Teschner T, Harbitz E, Schünemann V, Karlsen S, Arciero DM, Ciurli S, Trautwein AX, Hooper AB, Andersson KK.; Low-temperature EPR and Mössbauer spectroscopy of two cytochromes with His-Met axial coordination exhibiting HALS signals.; Chemphyschem. 2006 Jun 12;7(6):1258-67.