{"id":29,"date":"2018-04-25T12:06:15","date_gmt":"2018-04-25T10:06:15","guid":{"rendered":"https:\/\/site.uit.no\/cube\/?page_id=29"},"modified":"2019-12-19T13:51:03","modified_gmt":"2019-12-19T12:51:03","slug":"publications","status":"publish","type":"page","link":"https:\/\/site.uit.no\/cube\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"<ul>\n<li><strong>S\u00f3can, Jaka; Isaksen, Geir Villy; Brandsdal, Bj\u00f8rn Olav; \u00c5qvist, Johan.<\/strong><a href=\"https:\/\/www.nature.com\/articles\/s41598-019-55697-4\"> Towards Rational Computational Engineering of Psychrophilic Enzymes.<\/a>\u00a0<em>Scientific Reports Nature Research (2019) DOI:\u00a010.1038\/s41598-019-55697-4<\/em><\/li>\n<li><strong>Jespers, Willem; Isaksen, Geir Villy; Andberg, Tor A.H.; Vasile, Silvana; Veen, Amber van; \u00c5qvist, Johan; Brandsdal, Bj\u00f8rn-Olav; Guit\u00e9rres de Terr\u00e1n, Hugo.\u00a0<\/strong><a href=\"https:\/\/pubs.acs.org\/doi\/10.1021\/acs.jctc.9b00538\">QresFep: an automated protocol for the free energy calculation of protein mutations in Q.<\/a>\u00a0<em>Journal of Chemical Theory and Computation (2019) DOI: 10.1021\/acs.jctc.9b00538<br \/>\n<\/em><\/li>\n<li><strong>So\u010dan, Jaka; Kazemi, Masoud; Isaksen, Geir Villy; Brandsdal, Bj\u00f8rn Olav; \u00c5qvist, Johan<\/strong>. <a href=\"https:\/\/pubs.acs.org\/doi\/10.1021\/acs.biochem.8b00078\">Catalytic adaptation of psycrophilic elastase<\/a>.\u00a0<em>Biochemistry\u00a0<\/em>(2018); DOI 10.1021\/acsbiochem.8b00078<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<h5>Relevant publications prior to CUBE3<\/h5>\n<hr \/>\n<ul>\n<li><strong>\u00c5qvist, Johan; Isaksen, Geir Villy; Brandsdal, Bj\u00f8rn Olav.<\/strong><strong>\u00a0<\/strong><a href=\"https:\/\/www.nature.com\/articles\/s41570-017-0051\">Computation of enzyme cold adaptation<\/a>. <em>Nature Reviews Chemistry <\/em>(2017); DOI 10.1038\/s41570-017-0051<\/li>\n<li><strong>\u00c5qvist, Johan.\u00a0<\/strong><a href=\"https:\/\/pubs.acs.org\/doi\/10.1021\/acs.biochem.7b00523\">Cold Adaptation of Triosephosphate Isomerase<\/a>.\u00a0<em>Biochemistry<\/em>(2017); DOI 10.1021\/acs.biochem.7b00523<\/li>\n<li><strong>Michetti, Davide; Brandsdal, Bj\u00f8rn Olav; Bon, Davide; Isaksen, Geir Villy; Tiberti, Matteo; Papaleo, Elena.\u00a0<\/strong><a href=\"http:\/\/journals.plos.org\/plosone\/article?id=10.1371\/journal.pone.0169586\">A comparative study of cold- and warm-adapted endonuclease A using sequence analyses and molecular dynamics simulations<\/a>. <em>PLoS ONE<\/em>(2017); DOI 10.1371\/journal.pone.0169586<\/li>\n<li><strong>\u00c5qvist, Johan; Kazemi, Masoud; Isaksen, Geir Villy; Brandsdal, Bj\u00f8rn Olav.\u00a0<\/strong><a href=\"https:\/\/pubs.acs.org\/doi\/abs\/10.1021\/acs.accounts.6b00321\">Entropy and enzyme catalysis. <em>Accounts of Chemical Research<\/em><\/a>(2017); DOI 10.1021\/acs.accounts.6b00321<\/li>\n<li><strong>Isaksen, Geir Villy<\/strong><strong>; Brandsdal, Bj\u00f8rn Olav; \u00c5qvist, Johan.\u00a0<\/strong><a href=\"https:\/\/pubs.acs.org\/doi\/abs\/10.1021\/acs.biochem.6b00967\">Thermodynamics of the purine nucleoside reaction revealed by computer simulations<\/a>.\u00a0<em>Biochemistry<\/em>(2016) ;doi: 10.1021\/acs.biochem.6b00967<\/li>\n<li><strong>Isaksen, Geir Villy<\/strong><strong>; Brandsdal, Bj\u00f8rn Olav; \u00c5qvist, Johan.\u00a0<\/strong><a href=\"http:\/\/www.pnas.org\/content\/113\/28\/7822.long\">Enzyme surface rigidity tunes the temperature dependence of catalytic rates.\u00a0<\/a><em>Proceedings of the National Academy of Sciences of the United States of America<\/em>(2016); Volum 113.(28) p. 7822-7827<\/li>\n<li><strong>Isaksen, Geir Villy<\/strong><strong>; Andberg, Tor Arne Heim; \u00c5qvist, Johan; Brandsdal, Bj\u00f8rn Olav.\u00a0<\/strong><a href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S1093326315000856?via%3Dihub\">Qgui: A high-throughput interface for automated setup and analysis of free energy calculations and empirical valence bond simulations in biological systems<\/a>. <em>Journal of Molecular Graphics and Modelling<\/em>(2015); Volum 60. p. 15-23<\/li>\n<li><strong>Isaksen, Geir Villy; \u00c5qvist, Johan; Brandsdal, Bj\u00f8rn Olav.\u00a0<\/strong><a href=\"http:\/\/journals.plos.org\/ploscompbiol\/article?id=10.1371\/journal.pcbi.1003813\">Protein surface softness is the origin of enzyme cold-adaptation of trypsin.<\/a> <em>PloS Computational Biology<\/em>(2014); DOI 10:e1003813.(8)<\/li>\n<li><strong>Bjelic, Sinisa; Brandsdal, Bj\u00f8rn Olav; \u00c5qvist, Johan.\u00a0<\/strong><a href=\"https:\/\/pubs.acs.org\/doi\/abs\/10.1021\/bi801177k\">Cold Adaptation of Enzyme Reaction Rates<\/a>.\u00a0<em>Biochemistry<\/em>(2008); DOI 10.1021\/bi801177k<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>S\u00f3can, Jaka; Isaksen, Geir Villy; Brandsdal, Bj\u00f8rn Olav; \u00c5qvist, Johan. Towards Rational Computational Engineering of Psychrophilic Enzymes.\u00a0Scientific Reports Nature Research (2019) DOI:\u00a010.1038\/s41598-019-55697-4 Jespers, Willem; Isaksen, Geir Villy; Andberg, Tor A.H.; Vasile, Silvana; Veen, Amber van; \u00c5qvist, Johan; Brandsdal, Bj\u00f8rn-Olav; Guit\u00e9rres &hellip; <a href=\"https:\/\/site.uit.no\/cube\/publications\/\">Continued<\/a><\/p>\n","protected":false},"author":862,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-29","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/site.uit.no\/cube\/wp-json\/wp\/v2\/pages\/29","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/site.uit.no\/cube\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/site.uit.no\/cube\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/site.uit.no\/cube\/wp-json\/wp\/v2\/users\/862"}],"replies":[{"embeddable":true,"href":"https:\/\/site.uit.no\/cube\/wp-json\/wp\/v2\/comments?post=29"}],"version-history":[{"count":11,"href":"https:\/\/site.uit.no\/cube\/wp-json\/wp\/v2\/pages\/29\/revisions"}],"predecessor-version":[{"id":370,"href":"https:\/\/site.uit.no\/cube\/wp-json\/wp\/v2\/pages\/29\/revisions\/370"}],"wp:attachment":[{"href":"https:\/\/site.uit.no\/cube\/wp-json\/wp\/v2\/media?parent=29"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}